.fods parser correction for hyperlinks

Bumps [actions/checkout](https://github.com/actions/checkout) from 5 to 6.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v5...v6)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-version: '6'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

.github/dependabot.yml

@@ -0,0 +1,22 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "daily"
+    commit-message:
+      prefix: 💚 ci
+      include: "scope"
+
+  - package-ecosystem: "pip"
+    directory: "/"
+    schedule:
+      interval: "daily"
+    commit-message:
+      prefix: ⬆️  dep-bump
+      include: "scope"

.github/workflows/lint_and_test.yml

@@ -2,9 +2,9 @@ name: Lint and test
 
 on:
   push:
-    branches: [ "**" ]
+    branches: ["**"]
   pull_request:
-    branches: [ master ]
+    branches: [master]
 
 jobs:
   test:
@@ -12,34 +12,36 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python_version: ["3.8", "3.9", "3.10"]
+        python_version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
       fail-fast: false
 
     steps:
-    - uses: actions/checkout@v2
+      - uses: actions/checkout@v6
-    - name: Set up Python ${{ matrix.python_version }}
+      - name: Set up Python ${{ matrix.python_version }}
-      uses: actions/setup-python@v2
+        uses: actions/setup-python@v6
-      with:
+        with:
-        python-version: ${{ matrix.python_version }}
+          python-version: ${{ matrix.python_version }}
-    - uses: actions/cache@v2
+      - name: Install poetry
-      id: cache
+        uses: abatilo/actions-poetry@v4
-      with:
+        with:
-        path: ${{ env.pythonLocation }}
+          poetry-version: "2.1.2"
-        key: ${{ runner.os }}-python-${{ env.pythonLocation }}-${{ hashFiles('pyproject.toml') }}-root
+      - name: Configure poetry
-    - name: Install poetry
+        run: |
-      if: steps.cache.outputs.cache-hit != 'true'
+          poetry config virtualenvs.create true --local
-      run: |
+          poetry config virtualenvs.in-project true --local
-        python -m pip install --upgrade pip
+      - uses: actions/cache@v4
-        python -m pip install poetry
+        name: Define a cache for the virtual environment based on the dependencies lock file
-    - name: Configure poetry
+        with:
-      run: python -m poetry config virtualenvs.create false
+          path: ./.venv
-    - name: Install Dependencies
+          key: ${{ runner.os }}-python-${{ env.pythonLocation }}-${{ hashFiles('poetry.lock') }}-venv
-      if: steps.cache.outputs.cache-hit != 'true'
+      - name: Install build dependencies
-      run: python -m poetry install
+        run: sudo apt install -y libxml2-dev libxslt-dev
-    - name: Lint with black
+      - name: Install Dependencies
-      run: |
+        run: poetry install
-        # stop the build if there are Python syntax errors or undefined names
+      - name: Lint with black
-        black --check --diff pandas_ods_reader/ tests/
+        run: |
-    - name: Test with pytest
+          # stop the build if there are Python syntax errors or undefined names
-      run: |
+          poetry run black --check --diff pandas_ods_reader/ tests/
-        python -m pytest tests/
+      - name: Test with pytest
+        run: |
+          poetry run pytest tests/

.gitignore

@@ -33,3 +33,9 @@ venv/
 
 # mypy
 .mypy_cache/
+
+# pyenv
+.python-version
+
+# mise
+mise.local.toml

pandas_ods_reader/main.py

@@ -1,4 +1,5 @@
 """Imports an ods or fods file into a DataFrame object"""
+
 from pathlib import Path
 from typing import Optional, List, Union
 
@@ -36,11 +37,11 @@ def read_ods(
     """
     path = file_or_path if isinstance(file_or_path, Path) else Path(file_or_path)
     if not path.is_file():
-        raise FileNotFoundError(f"file {file_or_path} does not exist")
+        raise FileNotFoundError(f"file {path} does not exist")
-    backend = EXT_MAP.get(Path(file_or_path).suffix, ods)
+    backend = EXT_MAP.get(path.suffix, ods)
     return algo.read_data(
         backend,
-        Path(file_or_path),
+        path,
         sheet,
         headers=headers,
         columns=columns or [],

pandas_ods_reader/parsers/fods.py

@@ -64,7 +64,7 @@ def get_value(
     text = cell.find(TABLE_CELL_TEXT_TAG, namespaces=cell.nsmap)
     if text is None:
         return None, 0
-    value: Union[str, float] = text.text or ""
+    value: Union[str, float] = "".join(text.itertext())
     if parsed and is_float(cell):
         value = float(value)
     _n_repeated = cell.attrib.get(

pandas_ods_reader/utils.py

@@ -1,4 +1,5 @@
 """Provides utility functions for the parser"""
+
 import pandas as pd
 
 

pyproject.toml

@@ -1,39 +1,40 @@
 [tool.poetry]
 name = "pandas-ods-reader"
-version = "0.2.0"
+version = "1.0.2"
 description = "Read in .ods and .fods files and return a pandas.DataFrame."
 authors = ["iuvbio <iuvbio@users.noreply.github.com>"]
 license = "MIT"
 readme = "README.md"
 repository = "https://github.com/iuvbio/pandas_ods_reader"
-keywords = [ "data", "io", "pandas", "ods" ]
+keywords = ["data", "io", "pandas", "ods"]
 classifiers = [
-	"Development Status :: 5 - Production/Stable",
+  "Development Status :: 5 - Production/Stable",
-	"License :: OSI Approved :: MIT License",
+  "License :: OSI Approved :: MIT License",
-	"Programming Language :: Python :: 3",
+  "Programming Language :: Python :: 3",
-	"Topic :: Utilities"
+  "Topic :: Utilities",
 ]
 
 [tool.poetry.dependencies]
-python = ">=3.8.1,<3.12"
+python = ">=3.9,<4"
-ezodf = "^0.3.2"
+ezodf = ">=0.3.2"
-lxml = "^4.9.2"
+lxml = ">=4.9.2"
-pandas = "^1.5.2"
+pandas = ">=2.2.3"
 
 [tool.poetry.group.dev.dependencies]
-black = "^22.10.0"
+black = ">=22.10.0"
-pytest = "^7.1.3"
+pytest = ">=7.1.3"
-pytest-cov = "^4.0.0"
+pytest-cov = ">=4.0.0"
-mypy = "^0.991"
+mypy = ">=0.991"
-flake8 = "^6.0.0"
+flake8 = ">=6.0.0"
-pandas-stubs = "^1.5.2.221213"
+pandas-stubs = ">=1.5.2.221213"
-types-lxml = "^2022.11.8"
+types-lxml = ">=2022.11.8"
-commitizen = "^2.38.0"
+commitizen = ">=2.38.0"
+pre-commit = ">=3.7.1"
 
 [tool.commitizen]
 name = "cz_conventional_commits"
-version = "0.2.0"
 tag_format = "v$version"
+version_provider = "poetry"
 version_files = ["pyproject.toml:version"]
 
 [build-system]

tests/test_read_ods.py

@@ -1,4 +1,5 @@
 """Tests for core read_ods function with different files"""
+
 from pathlib import Path
 
 import pandas as pd